集群管理日志记录
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1,某节点硬件故障,需要更换
/opt/tsce/server_priv/nodes里 把cu02 np=xx 后面的参数给删了 service tsce restart 就行了 ###把该节点从队列中剔除
2,提交的作业运行不了,报错,有可能是环境问题,在用户家目录下.bashrc
source /opt/intel/composer_xe_2015/bin/compilervars.sh intel64 source /opt/intel/mkl/bin/intel64/mklvars_intel64.sh source /opt/intel/impi/5.0.2.044/bin64/mpivars.sh
3,HDF5安装,要安装 zlib, szip
Homepage: http://www.hdfgroup.org Version: 1.8.12 Reference: http://www.hdfgroup.org/HDF5/release/cmakebuild.html Download and extract HDF5 source code: $ wget http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz $ tar xzpf hdf5-1.8.12.tar.gz $ cd hdf5-1.8.12 Configure, build with GCC, then install: $ module purge && module load gcc/4.9.1 $ ./configure --enable-cxx --enable-fortran --with-zlib --with-zlib --enable-production --prefix=/lustre/usr/hdf5/gcc49/1.8.12 $ make clean; make -j8 $ sudo make install Configure, build with Intel compiler, then install: $ module purge && module load icc/15.0.0 $ ./configure --enable-cxx --enable-fortran --with-zlib --with-zlib --enable-production --prefix=/lustre/usr/hdf5/icc15/1.8.12 $ make clean; make -j8 $ sudo make install 然后在用户的.bashrc中添加如下 export LIBRARY_PATH=/opt/hdf5/lib:$LIBRARY_PATH export LIBRARY_PATH=/opt/zlib/lib:$LIBRARY_PATH export LIBRARY_PATH=/opt/szip/lib:$LIBRARY_PATH export LD_LIBRARY_PATH=/opt/szip/lib:$LD_LIBRARY_PATH export LD_LIBRARY_PATH=/opt/zlib/lib:$LD_LIBRARY_PATH export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH export PATH=/opt/hdf5/bin:$PATH export CPATH=/opt/hdf5/include:$CPATH export CPATH=/opt/zlib/include:$CPATH export CPATH=/opt/szip/include:$CPATH
4,MATLAB作业提交,如果不用export,需要创建alias matlab='/opt/MATLAB/R2015a/bin/'
#!/bin/bash #PBS -N Ground #PBS -q du #PBS -l walltime=24:00:00 #PBS -l nodes=1:ppn=2 #PBS -V cd ~/folder export PATH=$PATH:'/opt/MATLAB/R2015a/bin/' matlab -nodisplay -nosplash < Ground.m > run.log
5,Abaqus脚本
#!/bin/bash #PBS -q du #PBS -l walltime=24:00:00 #PBS -l nodes=1:ppn=6 #PBS -N abaqus # module load mpich2-1.0.7-intel64/10.1.015 cd /home/abaqus/data/BCT /opt/abaqus/Commands/abaqus analysis job=ch3 cpu=6 interactive
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